BioXTAS RAW
2.1.1
  • Installation
  • Getting Help
  • RAW Tutorial
    • Introduction
    • Basic processing
    • Advanced processing
    • Creating a configuration file
  • SAXS Tutorial
  • Videos
  • Cite
  • RAW API
  • Manual
  • Changes
BioXTAS RAW
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  • RAW Tutorial
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RAW Tutorial

  • Introduction
    • Overview
    • Requirements
    • Other useful materials
    • Notes
  • Basic processing
    • Loading configuration files and images, creating subtracted scattering profiles, saving profiles
    • Guinier analysis
    • Molecular weight analysis
    • Saving analysis information
    • Kratky analysis
    • Similarity Testing
    • Basic SEC-SAXS processing
    • WAXS processing and merging
    • A few additional tricks
  • Advanced processing
    • Pair-distance distribution analysis – GNOM in RAW
    • Pair-distance distribution analysis – BIFT in RAW
    • Assessing ambiguity of 3D shape information - AMBIMETER in RAW
    • 3D reconstruction with bead models – DAMMIF/N and DAMAVER in RAW
    • 3D reconstruction with electron density – DENSS in RAW
    • Aligning reconstructions with high resolution shapes
    • Advanced SEC-SAXS processing – Singular value decomposition (SVD)
    • Advanced SEC-SAXS processing – Evolving factor analysis (EFA)
    • Advanced Series processing – Regularized Alternating Least Squares (REGALS)
    • Advanced SEC-SAXS processing – Baseline correction
  • Creating a configuration file
    • Centering and calibration
    • Masking
    • Setting normalization and other options
    • Setting absolute scale with water
    • Setting absolute scale with glassy carbon
    • Setting a molecular weight standard
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